STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB30633.1Capsular exopolysaccharide family. (785 aa)    
Predicted Functional Partners:
SKB30623.1
Polysaccharide export outer membrane protein.
 0.999
SKB98223.1
Polysaccharide export outer membrane protein.
 0.998
SKB48628.1
Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.
  
 0.994
SKB70322.1
Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.
  
 0.994
SKB46689.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
 
 
 0.941
SKB88052.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
 
 0.937
SKB55149.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
 
 
 0.935
SKB49002.1
NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
 
 
 0.932
SKB28794.1
NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
 
 
 0.930
SKB98203.1
Sugar transferase.
 
 
 0.928
Your Current Organism:
Parapedobacter luteus
NCBI taxonomy Id: 623280
Other names: DSM 22899, JCM 15977, KACC 10955, P. luteus, Parapedobacter luteus Kim et al. 2010, Parapedobacter sp. 4M29, strain 4M29
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.