STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB34110.1Hypothetical protein. (1861 aa)    
Predicted Functional Partners:
SKB35018.1
Penicillin-binding protein 1C.
   
 0.875
SKB34115.1
AraC-type DNA-binding protein.
       0.655
SKB38459.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.491
SKB57855.1
Outer membrane protein beta-barrel family protein.
  
     0.462
SKB46951.1
Restriction endonuclease.
    
   0.459
SKB47909.1
Hypothetical protein.
  
     0.431
SKB92759.1
CarboxypepD_reg-like domain-containing protein.
  
     0.421
Your Current Organism:
Parapedobacter luteus
NCBI taxonomy Id: 623280
Other names: DSM 22899, JCM 15977, KACC 10955, P. luteus, Parapedobacter luteus Kim et al. 2010, Parapedobacter sp. 4M29, strain 4M29
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.