STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB45733.1Endo-1,4-beta-xylanase. (375 aa)    
Predicted Functional Partners:
SKB45677.1
Enterochelin esterase.
 
   0.968
SKB45712.1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
  0.904
SKB45703.1
alpha-N-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
  
  0.903
SKB45827.1
Glycosyl hydrolase family 67 N-terminus.
     0.862
SKB45546.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
  
  0.830
SKB45795.1
Alpha-glucuronidase; Belongs to the glycosyl hydrolase 67 family.
 
   
 0.797
SKB28798.1
Acetyl esterase/lipase.
 
      0.795
SKB45519.1
Sialate O-acetylesterase.
 
  
  0.746
SKB45688.1
Hypothetical protein.
 
     0.671
SKB29451.1
Putative membrane-bound dehydrogenase domain-containing protein.
  
  
 0.626
Your Current Organism:
Parapedobacter luteus
NCBI taxonomy Id: 623280
Other names: DSM 22899, JCM 15977, KACC 10955, P. luteus, Parapedobacter luteus Kim et al. 2010, Parapedobacter sp. 4M29, strain 4M29
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