STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB46729.1O-antigen ligase like membrane protein. (397 aa)    
Predicted Functional Partners:
SKB46768.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
  
 0.825
SKB46719.1
Glycosyltransferase involved in cell wall bisynthesis.
  
 
  0.800
SKB46739.1
Glycosyltransferase involved in cell wall bisynthesis.
  
 
  0.800
SKB46748.1
Glycosyltransferase involved in cell wall bisynthesis.
  
 
  0.800
SKB46698.1
Rhamnosyltransferase.
  
  
 0.796
SKB46756.1
Glycosyltransferase involved in cell wall bisynthesis.
  
    0.775
SKB46710.1
Parallel beta-helix repeat (two copies).
       0.774
SKB46776.1
Protein of unknown function.
       0.613
SKB46689.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
  
  
 0.610
SKB28794.1
NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
  
  
 0.516
Your Current Organism:
Parapedobacter luteus
NCBI taxonomy Id: 623280
Other names: DSM 22899, JCM 15977, KACC 10955, P. luteus, Parapedobacter luteus Kim et al. 2010, Parapedobacter sp. 4M29, strain 4M29
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.