STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB47927.1Winged helix DNA-binding domain-containing protein. (99 aa)    
Predicted Functional Partners:
SKB47909.1
Hypothetical protein.
 
     0.965
SKB47939.1
Hypothetical protein.
    
  0.559
SKB47898.1
Hypothetical protein.
       0.550
SKB41692.1
Transglutaminase-like superfamily protein.
  
     0.486
SKB47955.1
Hypothetical protein.
       0.460
SKB41702.1
Transglutaminase-like superfamily protein.
  
     0.445
SKB28910.1
HD domain-containing protein.
  
     0.412
Your Current Organism:
Parapedobacter luteus
NCBI taxonomy Id: 623280
Other names: DSM 22899, JCM 15977, KACC 10955, P. luteus, Parapedobacter luteus Kim et al. 2010, Parapedobacter sp. 4M29, strain 4M29
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.