STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB48628.1Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold. (841 aa)    
Predicted Functional Partners:
SKB55030.1
Uncharacterized protein involved in exopolysaccharide biosynthesis.
 
 0.995
SKB30633.1
Capsular exopolysaccharide family.
  
 0.994
SKB98235.1
Capsular exopolysaccharide family.
  
 0.994
SKB48613.1
Chain length determinant protein.
 
 0.970
SKB70651.1
Chain length determinant protein.
 
 0.919
SKB70405.1
Wzt C-terminal domain-containing protein.
  
  
 0.744
SKB70391.1
Lipopolysaccharide transport system permease protein.
  
  
 0.734
SKB28794.1
NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
  
 
 0.611
SKB49002.1
NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
  
 
 0.611
SKB48653.1
Capsule assembly protein Wzi.
       0.554
Your Current Organism:
Parapedobacter luteus
NCBI taxonomy Id: 623280
Other names: DSM 22899, JCM 15977, KACC 10955, P. luteus, Parapedobacter luteus Kim et al. 2010, Parapedobacter sp. 4M29, strain 4M29
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.