STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB49617.1Isopenicillin N synthase; Belongs to the iron/ascorbate-dependent oxidoreductase family. (309 aa)    
Predicted Functional Partners:
SKB54911.1
Amino acid adenylation domain-containing protein.
     
 0.897
SKB54901.1
Amino acid adenylation domain-containing protein.
    
 0.792
SKB49592.1
Gas vesicle protein.
       0.530
SKB47976.1
Uncharacterized zinc-type alcohol dehydrogenase-like protein.
   
 
  0.431
SKB84997.1
Alcohol dehydrogenase, propanol-preferring.
   
 
  0.431
SKB25935.1
Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.417
SKB39701.1
Ornithine--oxo-acid transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.417
SKB87811.1
Acetylornithine/succinyldiaminopimelate/putresci ne aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.417
Your Current Organism:
Parapedobacter luteus
NCBI taxonomy Id: 623280
Other names: DSM 22899, JCM 15977, KACC 10955, P. luteus, Parapedobacter luteus Kim et al. 2010, Parapedobacter sp. 4M29, strain 4M29
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.