STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB49826.1Putative membrane-bound dehydrogenase domain-containing protein. (1122 aa)    
Predicted Functional Partners:
SKB49819.1
Type 1 glutamine amidotransferase (GATase1).
  
  0.978
SKB56787.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
 
 
 0.956
SKB49812.1
Predicted dehydrogenase.
 
     0.909
SKB78453.1
Hypothetical protein.
    
 0.906
efp
Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
 0.894
SKB95953.1
Quinoprotein glucose dehydrogenase.
 
  
 0.871
SKB33956.1
Quinoprotein glucose dehydrogenase.
 
  
 0.856
SKB29451.1
Putative membrane-bound dehydrogenase domain-containing protein.
 
  
0.835
SKB29410.1
Putative heme-binding domain-containing protein.
  
  
  0.827
SKB49805.1
D-psicose/D-tagatose/L-ribulose 3-epimerase.
 
     0.793
Your Current Organism:
Parapedobacter luteus
NCBI taxonomy Id: 623280
Other names: DSM 22899, JCM 15977, KACC 10955, P. luteus, Parapedobacter luteus Kim et al. 2010, Parapedobacter sp. 4M29, strain 4M29
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