STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB51169.1Hypothetical protein. (110 aa)    
Predicted Functional Partners:
SKB69591.1
Trehalose 6-phosphate synthase/phosphatase.
   
    0.815
SKB51185.1
Branched-chain amino acid aminotransferase.
       0.561
SKB51159.1
C-terminal processing protease CtpA/Prc, contains a PDZ domain; Degrades oligopeptides; Belongs to the peptidase S41B family.
       0.507
SKB46380.1
Fructosamine-3-kinase.
   
    0.493
murQ
N-acetylmuramic acid 6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.
 
      0.449
SKB56265.1
Osmotically inducible protein OsmC.
   
    0.426
SKB80977.1
Osmotically inducible protein OsmC.
   
    0.426
SKB77456.1
Glucosylglycerol-phosphate synthase.
   
    0.418
Your Current Organism:
Parapedobacter luteus
NCBI taxonomy Id: 623280
Other names: DSM 22899, JCM 15977, KACC 10955, P. luteus, Parapedobacter luteus Kim et al. 2010, Parapedobacter sp. 4M29, strain 4M29
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