STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB58921.1Conserved repeat domain-containing protein/gliding motility-associated C-terminal domain-containing protein. (2343 aa)    
Predicted Functional Partners:
SKB58916.1
Type IX secretion system membrane protein, PorP/SprF family.
 
     0.808
SKB58900.1
WD40-like Beta Propeller Repeat.
 
 
   0.708
SKB58911.1
Hypothetical protein.
       0.632
SKB59044.1
Type IX secretion system membrane protein, PorP/SprF family.
 
     0.515
SKB85440.1
Subtilase family protein.
    
  0.496
SKB29451.1
Putative membrane-bound dehydrogenase domain-containing protein.
    
  0.466
SKB90531.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.444
SKB95742.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.440
SKB27120.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
    
   0.433
SKB89400.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.433
Your Current Organism:
Parapedobacter luteus
NCBI taxonomy Id: 623280
Other names: DSM 22899, JCM 15977, KACC 10955, P. luteus, Parapedobacter luteus Kim et al. 2010, Parapedobacter sp. 4M29, strain 4M29
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.