STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB63092.1Iron complex outermembrane recepter protein. (906 aa)    
Predicted Functional Partners:
SKB63079.1
Uncharacterized iron-regulated membrane protein.
 
     0.914
SKB63093.1
FecR family protein.
 
    0.893
SKB63209.1
FecR family protein.
 
    0.693
SKB63116.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
    0.686
SKB27964.1
Uncharacterized iron-regulated membrane protein.
  
     0.671
SKB84957.1
FecR family protein.
  
    0.654
SKB63265.1
FecR family protein.
 
    0.641
SKB28409.1
FecR family protein.
  
    0.638
SKB69952.1
FecR family protein.
  
    0.620
SKB28461.1
FecR family protein.
  
    0.617
Your Current Organism:
Parapedobacter luteus
NCBI taxonomy Id: 623280
Other names: DSM 22899, JCM 15977, KACC 10955, P. luteus, Parapedobacter luteus Kim et al. 2010, Parapedobacter sp. 4M29, strain 4M29
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.