STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB65341.1Hypothetical protein. (178 aa)    
Predicted Functional Partners:
SKB39599.1
Polyketide cyclase / dehydrase and lipid transport.
  
     0.751
SKB33337.1
Aspartyl protease.
  
     0.739
SKB89293.1
Zinc transporter ZupT.
  
     0.733
SKB85605.1
Hypothetical protein.
  
     0.730
SKB48577.1
Hypothetical protein.
  
     0.723
SKB57087.1
Protein TonB, links inner and outer membranes.
 
     0.715
SKB51206.1
pRiA4b ORF-3-like protein.
  
     0.712
SKB69886.1
Putative porin.
  
     0.706
SKB48968.1
ATP-dependent Clp protease adaptor protein ClpS; Belongs to the ClpS family.
  
 
   0.693
SKB50317.1
Hypothetical protein.
  
     0.678
Your Current Organism:
Parapedobacter luteus
NCBI taxonomy Id: 623280
Other names: DSM 22899, JCM 15977, KACC 10955, P. luteus, Parapedobacter luteus Kim et al. 2010, Parapedobacter sp. 4M29, strain 4M29
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.