STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB68261.1Hypothetical protein. (446 aa)    
Predicted Functional Partners:
SKB68204.1
Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
     0.942
SKB68211.1
F5/8 type C domain-containing protein; Belongs to the glycosyl hydrolase 43 family.
 
     0.871
SKB68242.1
F5/8 type C domain-containing protein; Belongs to the glycosyl hydrolase 43 family.
 
     0.853
SKB68273.1
Starch-binding associating with outer membrane.
 
     0.847
SKB68283.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.818
SKB90987.1
Alpha/beta hydrolase family protein.
 
     0.690
SKB82929.1
Starch-binding associating with outer membrane.
  
     0.647
SKB68298.1
Y_Y_Y domain-containing protein.
 
     0.602
SKB82938.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.535
SKB68236.1
Arylsulfatase A.
       0.514
Your Current Organism:
Parapedobacter luteus
NCBI taxonomy Id: 623280
Other names: DSM 22899, JCM 15977, KACC 10955, P. luteus, Parapedobacter luteus Kim et al. 2010, Parapedobacter sp. 4M29, strain 4M29
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.