STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB68283.1TonB-linked outer membrane protein, SusC/RagA family. (1008 aa)    
Predicted Functional Partners:
SKB68273.1
Starch-binding associating with outer membrane.
 
   0.959
SKB68261.1
Hypothetical protein.
 
     0.818
SKB65237.1
Starch-binding associating with outer membrane.
  
 
   0.810
SKB30365.1
Starch-binding associating with outer membrane.
 
 
   0.809
SKB94630.1
Starch-binding associating with outer membrane.
  
 
   0.782
SKB97106.1
Starch-binding associating with outer membrane.
  
 
   0.772
SKB51411.1
SusD family protein.
  
 
   0.766
SKB28469.1
Starch-binding associating with outer membrane.
  
 
   0.763
SKB68034.1
Starch-binding associating with outer membrane.
  
 
   0.737
SKB29403.1
Starch-binding associating with outer membrane.
 
 
   0.736
Your Current Organism:
Parapedobacter luteus
NCBI taxonomy Id: 623280
Other names: DSM 22899, JCM 15977, KACC 10955, P. luteus, Parapedobacter luteus Kim et al. 2010, Parapedobacter sp. 4M29, strain 4M29
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.