STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB70007.1Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (439 aa)    
Predicted Functional Partners:
SKB68113.1
Signal transduction histidine kinase.
   
0.977
SKB69995.1
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains.
 
 
 0.975
SKB82312.1
PAS domain-containing protein.
 
 
0.954
SKB57505.1
Signal transduction histidine kinase.
   
0.939
SKB90717.1
Signal transduction histidine kinase.
 
 
 0.931
SKB63013.1
Signal transduction histidine kinase.
 
 
 0.904
SKB37864.1
Ligand-binding sensor domain-containing protein.
 
 
0.894
SKB44870.1
Signal transduction histidine kinase.
 
 
0.892
SKB45560.1
Signal transduction histidine kinase.
 
 
0.892
SKB63533.1
Signal transduction histidine kinase.
 
 
0.892
Your Current Organism:
Parapedobacter luteus
NCBI taxonomy Id: 623280
Other names: DSM 22899, JCM 15977, KACC 10955, P. luteus, Parapedobacter luteus Kim et al. 2010, Parapedobacter sp. 4M29, strain 4M29
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