Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SKB48344.1 | SKB58061.1 | SAMN05660226_01581 | SAMN05660226_02170 | Threonine synthase. | Glutamate synthase (NADPH/NADH) large chain. | 0.695 |
SKB48344.1 | SKB75432.1 | SAMN05660226_01581 | SAMN05660226_03006 | Threonine synthase. | L-threonine aldolase. | 0.902 |
SKB48344.1 | SKB77695.1 | SAMN05660226_01581 | SAMN05660226_03084 | Threonine synthase. | Glycine C-acetyltransferase. | 0.453 |
SKB48344.1 | gcvP | SAMN05660226_01581 | SAMN05660226_04097 | Threonine synthase. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.432 |
SKB48344.1 | ilvA | SAMN05660226_01581 | SAMN05660226_00481 | Threonine synthase. | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.975 |
SKB48344.1 | kbl | SAMN05660226_01581 | SAMN05660226_02523 | Threonine synthase. | 2-amino-3-ketobutyrate coenzyme A ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA. | 0.453 |
SKB58061.1 | SKB48344.1 | SAMN05660226_02170 | SAMN05660226_01581 | Glutamate synthase (NADPH/NADH) large chain. | Threonine synthase. | 0.695 |
SKB58061.1 | SKB75432.1 | SAMN05660226_02170 | SAMN05660226_03006 | Glutamate synthase (NADPH/NADH) large chain. | L-threonine aldolase. | 0.470 |
SKB58061.1 | gcvP | SAMN05660226_02170 | SAMN05660226_04097 | Glutamate synthase (NADPH/NADH) large chain. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.945 |
SKB58061.1 | gcvT | SAMN05660226_02170 | SAMN05660226_02643 | Glutamate synthase (NADPH/NADH) large chain. | Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine. | 0.936 |
SKB58061.1 | glyA | SAMN05660226_02170 | SAMN05660226_00306 | Glutamate synthase (NADPH/NADH) large chain. | Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.932 |
SKB58061.1 | ilvA | SAMN05660226_02170 | SAMN05660226_00481 | Glutamate synthase (NADPH/NADH) large chain. | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.695 |
SKB58717.1 | SKB75432.1 | SAMN05660226_02224 | SAMN05660226_03006 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | L-threonine aldolase. | 0.876 |
SKB58717.1 | gcvP | SAMN05660226_02224 | SAMN05660226_04097 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.514 |
SKB75432.1 | SKB48344.1 | SAMN05660226_03006 | SAMN05660226_01581 | L-threonine aldolase. | Threonine synthase. | 0.902 |
SKB75432.1 | SKB58061.1 | SAMN05660226_03006 | SAMN05660226_02170 | L-threonine aldolase. | Glutamate synthase (NADPH/NADH) large chain. | 0.470 |
SKB75432.1 | SKB58717.1 | SAMN05660226_03006 | SAMN05660226_02224 | L-threonine aldolase. | NADP-dependent 3-hydroxy acid dehydrogenase YdfG; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.876 |
SKB75432.1 | SKB75442.1 | SAMN05660226_03006 | SAMN05660226_03007 | L-threonine aldolase. | Metallo-beta-lactamase superfamily protein. | 0.737 |
SKB75432.1 | SKB77695.1 | SAMN05660226_03006 | SAMN05660226_03084 | L-threonine aldolase. | Glycine C-acetyltransferase. | 0.879 |
SKB75432.1 | gcvP | SAMN05660226_03006 | SAMN05660226_04097 | L-threonine aldolase. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.926 |
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