STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB78012.1Predicted neuraminidase (sialidase). (383 aa)    
Predicted Functional Partners:
SKB93533.1
alpha-L-fucosidase.
  
  0.918
SKB77997.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
 
     0.775
SKB78063.1
Hypothetical protein.
 
     0.642
SKB77985.1
solute:Na+ symporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.598
SKB99942.1
Right handed beta helix region.
 
     0.596
SKB28349.1
Glycerophosphoryl diester phosphodiesterase.
 
      0.548
SKB33769.1
FAD dependent oxidoreductase.
  
     0.546
SKB57039.1
BNR repeat-like domain-containing protein.
 
  
 
0.540
SKB56986.1
BNR repeat-like domain-containing protein.
 
  
 
0.535
SKB28330.1
PhoPQ-activated pathogenicity-related protein.
 
     0.503
Your Current Organism:
Parapedobacter luteus
NCBI taxonomy Id: 623280
Other names: DSM 22899, JCM 15977, KACC 10955, P. luteus, Parapedobacter luteus Kim et al. 2010, Parapedobacter sp. 4M29, strain 4M29
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.