STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB83972.1C-terminal domain of CHU protein family protein. (525 aa)    
Predicted Functional Partners:
SKB33878.1
Hypothetical protein.
  
     0.775
SKB33879.1
Hypothetical protein.
  
     0.773
SKB83960.1
Nucleoside-diphosphate-sugar epimerase.
       0.699
SKB83934.1
Hypothetical protein.
       0.671
SKB83948.1
DNA-binding regulatory protein, YebC/PmpR family.
       0.671
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
       0.649
SKB97758.1
Hypothetical protein.
  
     0.648
SKB37487.1
Protein of unknown function.
  
     0.647
SKB29639.1
Hypothetical protein.
  
     0.631
SKB73543.1
Anti-anti-sigma factor.
  
     0.624
Your Current Organism:
Parapedobacter luteus
NCBI taxonomy Id: 623280
Other names: DSM 22899, JCM 15977, KACC 10955, P. luteus, Parapedobacter luteus Kim et al. 2010, Parapedobacter sp. 4M29, strain 4M29
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.