STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB85733.1CarboxypepD_reg-like domain-containing protein. (253 aa)    
Predicted Functional Partners:
SKB57087.1
Protein TonB, links inner and outer membranes.
  
   0.808
SKB73031.1
Hypothetical protein.
  
     0.713
SKB69886.1
Putative porin.
  
     0.711
SKB57141.1
Hypothetical protein.
  
     0.705
SKB85167.1
Protein of unknown function.
  
     0.698
SKB85702.1
Transcriptional regulator, TetR family.
 
     0.690
SKB85717.1
Hypothetical protein.
 
     0.680
SKB56761.1
Hypothetical protein.
  
     0.668
SKB41378.1
Hypothetical protein.
  
     0.664
SKB57886.1
OstA-like protein.
  
     0.658
Your Current Organism:
Parapedobacter luteus
NCBI taxonomy Id: 623280
Other names: DSM 22899, JCM 15977, KACC 10955, P. luteus, Parapedobacter luteus Kim et al. 2010, Parapedobacter sp. 4M29, strain 4M29
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.