STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB86917.1GLPGLI family protein. (312 aa)    
Predicted Functional Partners:
SKB86931.1
Hypothetical protein.
 
     0.898
SKB93178.1
CarboxypepD_reg-like domain-containing protein.
  
     0.774
SKB26400.1
Carboxypeptidase regulatory-like domain-containing protein.
  
     0.771
SKB94928.1
Hypothetical protein.
  
     0.762
SKB89090.1
Hypothetical protein.
  
     0.509
SKB86889.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
     0.506
SKB86902.1
His Kinase A (phospho-acceptor) domain-containing protein.
       0.500
SKB57316.1
GLPGLI family protein.
  
     0.486
SKB34997.1
Hypothetical protein.
  
     0.464
SKB57855.1
Outer membrane protein beta-barrel family protein.
  
     0.459
Your Current Organism:
Parapedobacter luteus
NCBI taxonomy Id: 623280
Other names: DSM 22899, JCM 15977, KACC 10955, P. luteus, Parapedobacter luteus Kim et al. 2010, Parapedobacter sp. 4M29, strain 4M29
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