STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB89218.1ADP-ribose pyrophosphatase YjhB, NUDIX family. (152 aa)    
Predicted Functional Partners:
nadE
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
 
  
 0.745
SKB45965.1
Hypothetical protein.
  
     0.728
SKB35665.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
    
  0.675
SKB82312.1
PAS domain-containing protein.
  
 
  0.675
SKB85107.1
Hypothetical protein.
  
     0.655
SKB57316.1
GLPGLI family protein.
  
     0.624
SKB85118.1
Gliding motility-associated protein GldM.
  
     0.624
SKB50268.1
HAMP domain-containing protein.
  
     0.611
SKB99446.1
GLPGLI family protein.
  
     0.609
SKB26088.1
Hypothetical protein.
  
     0.599
Your Current Organism:
Parapedobacter luteus
NCBI taxonomy Id: 623280
Other names: DSM 22899, JCM 15977, KACC 10955, P. luteus, Parapedobacter luteus Kim et al. 2010, Parapedobacter sp. 4M29, strain 4M29
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.