STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB91504.1Protein of unknown function. (375 aa)    
Predicted Functional Partners:
SKB84454.1
Rhamnogalacturonyl hydrolase YesR.
 
     0.917
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
  
 0.904
SKB91497.1
2-deoxy-D-gluconate 3-dehydrogenase.
 
     0.819
SKB25790.1
Glycosyl Hydrolase Family 88.
     0.794
SKB70905.1
Glycosyl Hydrolase Family 88.
     0.791
SKB30453.1
Rhamnogalacturonyl hydrolase YesR.
 
     0.768
SKB27954.1
2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase.
 
  
 0.605
SKB85177.1
Protein of unknown function.
  
     0.443
SKB90898.1
Hypothetical protein.
  
     0.442
SKB58403.1
Pectinesterase.
 
      0.422
Your Current Organism:
Parapedobacter luteus
NCBI taxonomy Id: 623280
Other names: DSM 22899, JCM 15977, KACC 10955, P. luteus, Parapedobacter luteus Kim et al. 2010, Parapedobacter sp. 4M29, strain 4M29
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.