STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB96438.1Gluconate 2-dehydrogenase subunit 3. (177 aa)    
Predicted Functional Partners:
SKB96445.1
Choline dehydrogenase.
 
  0.904
SKB96426.1
Nucleoside transporter.
 
     0.834
SKB54970.1
Choline dehydrogenase.
 
  0.831
SKB89459.1
Choline dehydrogenase.
 
  0.831
SKB27285.1
Choline dehydrogenase.
 
  0.830
SKB58004.1
Choline dehydrogenase.
  
  0.809
SKB39922.1
Protein of unknown function.
  
     0.697
SKB57987.1
Gluconate 2-dehydrogenase subunit 3.
  
  
  0.653
SKB84312.1
Sugar phosphate isomerase/epimerase.
 
     0.573
SKB96418.1
Sugar phosphate isomerase/epimerase.
       0.566
Your Current Organism:
Parapedobacter luteus
NCBI taxonomy Id: 623280
Other names: DSM 22899, JCM 15977, KACC 10955, P. luteus, Parapedobacter luteus Kim et al. 2010, Parapedobacter sp. 4M29, strain 4M29
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.