STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB97304.1Outer membrane protein beta-barrel family protein. (292 aa)    
Predicted Functional Partners:
SKB68308.1
Outer membrane receptor proteins, mostly Fe transport.
  
 
 
0.747
SKB47020.1
Outer membrane receptor proteins, mostly Fe transport.
  
 
 
0.715
SKB84647.1
TonB family C-terminal domain-containing protein.
  
   0.681
SKB59625.1
TonB-linked outer membrane protein, SusC/RagA family.
   
 
  0.651
SKB77941.1
Periplasmic chaperone for outer membrane proteins Skp.
  
     0.467
SKB82657.1
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
   0.461
SKB97314.1
Putative transposase.
       0.458
SKB97321.1
Putative transposase.
       0.458
SKB37290.1
Hypothetical protein.
  
     0.426
SKB47126.1
Outer membrane receptor for ferrienterochelin and colicins.
 
 
  0.411
Your Current Organism:
Parapedobacter luteus
NCBI taxonomy Id: 623280
Other names: DSM 22899, JCM 15977, KACC 10955, P. luteus, Parapedobacter luteus Kim et al. 2010, Parapedobacter sp. 4M29, strain 4M29
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.