STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB98587.1Capsule assembly protein Wzi. (473 aa)    
Predicted Functional Partners:
SKB70088.1
Magnesium chelatase subunit I.
  
 0.998
SKB98578.1
Colanic acid biosynthesis glycosyl transferase WcaI.
  
    0.774
SKB98569.1
VanZ like family protein.
       0.773
SKB98558.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.768
SKB98454.1
Glycosyltransferase involved in cell wall bisynthesis.
  
    0.718
SKB98518.1
Glycosyltransferase involved in cell wall bisynthesis.
  
    0.718
SKB98433.1
Hypothetical protein.
       0.717
SKB98463.1
Transferase hexapeptide (six repeat-containing protein).
       0.717
SKB98549.1
Putative colanic acid biosynthesis acetyltransferase WcaF.
       0.717
SKB98402.1
Glycosyltransferase involved in cell wall bisynthesis.
  
    0.694
Your Current Organism:
Parapedobacter luteus
NCBI taxonomy Id: 623280
Other names: DSM 22899, JCM 15977, KACC 10955, P. luteus, Parapedobacter luteus Kim et al. 2010, Parapedobacter sp. 4M29, strain 4M29
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.