STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB87026.1AraC-type DNA-binding protein. (179 aa)    
Predicted Functional Partners:
SFB87009.1
Cu2+-exporting ATPase.
 
     0.655
SFB86991.1
Copper chaperone CopZ.
 
     0.612
SFB87043.1
TraM recognition site of TraD and TraG.
 
     0.556
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.485
SFC34290.1
Signal transduction histidine kinase.
     
 0.476
SFC72189.1
Signal transduction histidine kinase.
     
 0.473
SFC34366.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
  
     0.469
SFC75355.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
  
     0.441
SFB87063.1
Relaxase/Mobilisation nuclease domain-containing protein.
 
     0.408
SFB86520.1
Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family.
  
    0.403
Your Current Organism:
Parapedobacter composti
NCBI taxonomy Id: 623281
Other names: DSM 22900, JCM 15978, KACC 10972, P. composti, Parapedobacter composti Kim et al. 2010, Parapedobacter sp. 4M40, strain 4M40
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.