STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC62312.1Hypothetical protein. (298 aa)    
Predicted Functional Partners:
SFB86798.1
Haem-binding domain-containing protein.
  
 
 0.970
SFC39109.1
Cytochrome c peroxidase.
  
 
 0.970
SFB79322.1
Putative membrane-bound dehydrogenase domain-containing protein.
    
 
 0.940
SFC20787.1
Cytochrome c, mono-and diheme variants.
  
 0.935
SFC09081.1
WD40-like Beta Propeller Repeat.
  
   0.934
SFC72253.1
Azurin.
    
 
 0.932
SFB81472.1
Hypothetical protein.
  
 0.924
SFB82850.1
Cytochrome c, mono-and diheme variants.
  
 0.924
SFB82900.1
Protein of unknown function.
  
 0.924
SFB82912.1
Cytochrome C oxidase, cbb3-type, subunit III.
  
 0.924
Your Current Organism:
Parapedobacter composti
NCBI taxonomy Id: 623281
Other names: DSM 22900, JCM 15978, KACC 10972, P. composti, Parapedobacter composti Kim et al. 2010, Parapedobacter sp. 4M40, strain 4M40
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.