STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC81994.1DNA-binding transcriptional regulator, PadR family. (115 aa)    
Predicted Functional Partners:
SFC82032.1
Hypothetical protein.
 
     0.941
SFC82011.1
Hypothetical protein.
       0.791
SFC34776.1
PadR family transcriptional regulator, regulatory protein PadR.
  
     0.718
SFC81971.1
Ribose 5-phosphate isomerase B.
       0.509
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
       0.400
Your Current Organism:
Parapedobacter composti
NCBI taxonomy Id: 623281
Other names: DSM 22900, JCM 15978, KACC 10972, P. composti, Parapedobacter composti Kim et al. 2010, Parapedobacter sp. 4M40, strain 4M40
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.