DNTS_017877 protein (Danionella translucida)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DNTS_017877

CRIB domain-containing protein. (285 aa)

Predicted Functional Partners:

DNTS_008618

0.834

DNTS_022173

0.766

DNTS_008702

0.711

DNTS_032282

0.583

DNTS_013960

0.582

DNTS_014451

0.582

DNTS_029708

0.582

DNTS_002704

0.530

DNTS_020939

0.463

DNTS_027283

0.453

Your Current Organism:

Danionella translucida

NCBI taxonomy Id: 623744
Other names: D. translucida

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DNTS_002704	DNTS_017877	A0A553MKT4	A0A553N225	Uncharacterized protein.	CRIB domain-containing protein.	0.530
DNTS_008618	DNTS_008702	A0A553QSY0	A0A553MTE1	Uncharacterized protein.	Uncharacterized protein.	0.874
DNTS_008618	DNTS_017877	A0A553QSY0	A0A553N225	Uncharacterized protein.	CRIB domain-containing protein.	0.834
DNTS_008618	DNTS_022173	A0A553QSY0	A0A553RGK2	Uncharacterized protein.	CRIB domain-containing protein.	0.828
DNTS_008702	DNTS_008618	A0A553MTE1	A0A553QSY0	Uncharacterized protein.	Uncharacterized protein.	0.874
DNTS_008702	DNTS_017877	A0A553MTE1	A0A553N225	Uncharacterized protein.	CRIB domain-containing protein.	0.711
DNTS_008702	DNTS_022173	A0A553MTE1	A0A553RGK2	Uncharacterized protein.	CRIB domain-containing protein.	0.750
DNTS_013960	DNTS_017877	A0A553MUK9	A0A553N225	Septin-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	CRIB domain-containing protein.	0.582
DNTS_013960	DNTS_020939	A0A553MUK9	A0A553RC68	Septin-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	CRIB domain-containing protein.	0.406
DNTS_013960	DNTS_022173	A0A553MUK9	A0A553RGK2	Septin-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	CRIB domain-containing protein.	0.420
DNTS_014451	DNTS_017877	A0A553QLQ8	A0A553N225	Septin-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	CRIB domain-containing protein.	0.582
DNTS_014451	DNTS_020939	A0A553QLQ8	A0A553RC68	Septin-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	CRIB domain-containing protein.	0.406
DNTS_014451	DNTS_022173	A0A553QLQ8	A0A553RGK2	Septin-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	CRIB domain-containing protein.	0.420
DNTS_017877	DNTS_002704	A0A553N225	A0A553MKT4	CRIB domain-containing protein.	Uncharacterized protein.	0.530
DNTS_017877	DNTS_008618	A0A553N225	A0A553QSY0	CRIB domain-containing protein.	Uncharacterized protein.	0.834
DNTS_017877	DNTS_008702	A0A553N225	A0A553MTE1	CRIB domain-containing protein.	Uncharacterized protein.	0.711
DNTS_017877	DNTS_013960	A0A553N225	A0A553MUK9	CRIB domain-containing protein.	Septin-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.582
DNTS_017877	DNTS_014451	A0A553N225	A0A553QLQ8	CRIB domain-containing protein.	Septin-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.582
DNTS_017877	DNTS_020939	A0A553N225	A0A553RC68	CRIB domain-containing protein.	CRIB domain-containing protein.	0.463
DNTS_017877	DNTS_022173	A0A553N225	A0A553RGK2	CRIB domain-containing protein.	CRIB domain-containing protein.	0.766