DNTS_009438 protein (Danionella translucida)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DNTS_009438

Uncharacterized protein. (350 aa)

Predicted Functional Partners:

DNTS_034813

0.989

DNTS_004277

0.971

DNTS_008196

0.959

DNTS_014159

0.958

DNTS_002012

0.958

DNTS_028241

0.957

DNTS_014360

0.955

DNTS_014158

0.955

DNTS_022270

0.954

DNTS_024129

0.950

Your Current Organism:

Danionella translucida

NCBI taxonomy Id: 623744
Other names: D. translucida

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DNTS_002012	DNTS_004277	A0A553RB32	A0A553RI35	Phosphodiesterase.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.904
DNTS_002012	DNTS_008196	A0A553RB32	A0A553R5J1	Phosphodiesterase.	Phosphodiesterase.	0.888
DNTS_002012	DNTS_009438	A0A553RB32	A0A553PWP3	Phosphodiesterase.	Uncharacterized protein.	0.958
DNTS_002012	DNTS_014360	A0A553RB32	A0A553QTC1	Phosphodiesterase.	Uncharacterized protein.	0.481
DNTS_002012	DNTS_022270	A0A553RB32	A0A553QHR1	Phosphodiesterase.	WD_REPEATS_REGION domain-containing protein.	0.891
DNTS_002012	DNTS_028241	A0A553RB32	A0A553PIL9	Phosphodiesterase.	Uncharacterized protein.	0.481
DNTS_002012	DNTS_034813	A0A553RB32	A0A553RA17	Phosphodiesterase.	Uncharacterized protein.	0.963
DNTS_004277	DNTS_002012	A0A553RI35	A0A553RB32	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Phosphodiesterase.	0.904
DNTS_004277	DNTS_008196	A0A553RI35	A0A553R5J1	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Phosphodiesterase.	0.908
DNTS_004277	DNTS_009438	A0A553RI35	A0A553PWP3	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Uncharacterized protein.	0.971
DNTS_004277	DNTS_014158	A0A553RI35	A0A553R7W6	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Rhodopsin.	0.888
DNTS_004277	DNTS_014159	A0A553RI35	A0A553R7Y0	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Rhodopsin.	0.888
DNTS_004277	DNTS_014360	A0A553RI35	A0A553QTC1	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Uncharacterized protein.	0.831
DNTS_004277	DNTS_022270	A0A553RI35	A0A553QHR1	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	WD_REPEATS_REGION domain-containing protein.	0.964
DNTS_004277	DNTS_024129	A0A553RI35	A0A553QX79	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Rhodopsin.	0.888
DNTS_004277	DNTS_028241	A0A553RI35	A0A553PIL9	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Uncharacterized protein.	0.823
DNTS_004277	DNTS_034813	A0A553RI35	A0A553RA17	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Uncharacterized protein.	0.937
DNTS_008196	DNTS_002012	A0A553R5J1	A0A553RB32	Phosphodiesterase.	Phosphodiesterase.	0.888
DNTS_008196	DNTS_004277	A0A553R5J1	A0A553RI35	Phosphodiesterase.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.908
DNTS_008196	DNTS_009438	A0A553R5J1	A0A553PWP3	Phosphodiesterase.	Uncharacterized protein.	0.959