DNTS_021039 protein (Danionella translucida)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DNTS_021039

Uncharacterized protein. (101 aa)

Predicted Functional Partners:

DNTS_032945

0.822

DNTS_015827

0.816

DNTS_021544

0.815

DNTS_028651

0.786

DNTS_028644

0.786

DNTS_013291

0.785

DNTS_016583

0.741

DNTS_004824

0.741

DNTS_011051

0.741

DNTS_023804

0.737

Your Current Organism:

Danionella translucida

NCBI taxonomy Id: 623744
Other names: D. translucida

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DNTS_004824	DNTS_011051	A0A553RBR8	A0A553RG66	Uncharacterized protein.	RING-type domain-containing protein.	0.876
DNTS_004824	DNTS_021039	A0A553RBR8	A0A553QCQ5	Uncharacterized protein.	Uncharacterized protein.	0.741
DNTS_004824	DNTS_021544	A0A553RBR8	A0A553RFK1	Uncharacterized protein.	RING-type domain-containing protein.	0.949
DNTS_004824	DNTS_028644	A0A553RBR8	A0A553QLG0	Uncharacterized protein.	Uncharacterized protein.	0.566
DNTS_004824	DNTS_028651	A0A553RBR8	A0A553QLB5	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.566
DNTS_004824	DNTS_032945	A0A553RBR8	A0A553Q2F6	Uncharacterized protein.	RPN2_C domain-containing protein.	0.553
DNTS_011051	DNTS_004824	A0A553RG66	A0A553RBR8	RING-type domain-containing protein.	Uncharacterized protein.	0.876
DNTS_011051	DNTS_021039	A0A553RG66	A0A553QCQ5	RING-type domain-containing protein.	Uncharacterized protein.	0.741
DNTS_011051	DNTS_021544	A0A553RG66	A0A553RFK1	RING-type domain-containing protein.	RING-type domain-containing protein.	0.951
DNTS_011051	DNTS_028644	A0A553RG66	A0A553QLG0	RING-type domain-containing protein.	Uncharacterized protein.	0.566
DNTS_011051	DNTS_028651	A0A553RG66	A0A553QLB5	RING-type domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.566
DNTS_011051	DNTS_032945	A0A553RG66	A0A553Q2F6	RING-type domain-containing protein.	RPN2_C domain-containing protein.	0.553
DNTS_013291	DNTS_015827	A0A553PWN4	A0A553Q8J5	RPN5_C domain-containing protein.	AAA domain-containing protein.	0.998
DNTS_013291	DNTS_021039	A0A553PWN4	A0A553QCQ5	RPN5_C domain-containing protein.	Uncharacterized protein.	0.785
DNTS_013291	DNTS_023804	A0A553PWN4	A0A553QQH2	RPN5_C domain-containing protein.	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.	0.999
DNTS_013291	DNTS_028644	A0A553PWN4	A0A553QLG0	RPN5_C domain-containing protein.	Uncharacterized protein.	0.668
DNTS_013291	DNTS_028651	A0A553PWN4	A0A553QLB5	RPN5_C domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.668
DNTS_013291	DNTS_032945	A0A553PWN4	A0A553Q2F6	RPN5_C domain-containing protein.	RPN2_C domain-containing protein.	0.999
DNTS_015827	DNTS_013291	A0A553Q8J5	A0A553PWN4	AAA domain-containing protein.	RPN5_C domain-containing protein.	0.998
DNTS_015827	DNTS_021039	A0A553Q8J5	A0A553QCQ5	AAA domain-containing protein.	Uncharacterized protein.	0.816