STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pik-1Protein CBR-PIK-1; Belongs to the protein kinase superfamily. (399 aa)    
Predicted Functional Partners:
peli-1
Protein CBG09337.
    
 0.975
tli-1
Protein CBR-TLI-1.
   
 0.903
trf-1
Protein CBR-TRF-1.
   
 0.856
actl-1
Protein CBG05082.
    
 0.821
tol-1
Protein CBR-TOL-1.
   
 0.815
ubc-13
Protein CBR-UBC-13; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.782
rga-5
Protein CBR-RGA-5.
    
 0.758
ilcr-1
Protein CBG18736.
   
 0.748
ilcr-2
Protein CBG02408.
    
 0.727
nfki-1
Protein CBG07688.
   
 0.716
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.