STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nrde-3.2Protein CBG02180; Belongs to the argonaute family. (811 aa)    
Predicted Functional Partners:
nrde-2
Protein CBR-NRDE-2.
   
 
 0.784
rde-4
Protein CBR-RDE-4.
    
 0.773
nrde-4
Protein CBR-NRDE-4.
      
 0.713
sid-1
Protein CBR-SID-1.
    
 0.677
hpl-2
Protein CBR-HPL-2.
    
 
 0.669
prg-1
Protein CBR-PRG-1; Belongs to the argonaute family.
   
 
0.658
eri-1
Protein CBR-ERI-1.
   
 
 0.657
rrf-3
Protein CBR-RRF-3.
      
 0.656
ego-1
Protein CBR-EGO-1.
   
  
 0.647
rrf-1
Protein CBR-RRF-1.
   
  
 0.635
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.