STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG08010Protein CBG08010. (155 aa)    
Predicted Functional Partners:
Cbr-spe-42
Protein CBR-SPE-42.
    
 
 0.752
spe-41
Protein CBR-SPE-41.
   
 
 0.714
spe-19
Protein CBR-SPE-19.
   
 
 0.676
spe-9
Protein CBR-SPE-9.
    
 
 0.669
spe-17
Protein CBR-SPE-17.
   
  
 0.668
CBG26383
Protein CBG26383.
      
 0.666
spe-10
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
    
 
 0.651
spe-49
Protein CBG18903.
   
  
 0.644
zig-11
Protein CBG21818.
      
 0.625
spe-8
Spermatocyte protein spe-8; Probable non-receptor tyrosine-protein kinase which plays a role in spermatid activation (spermiogenesis) in hermaphrodites.
   
  
 0.610
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.