STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubl-5Protein CBR-UBL-5. (73 aa)    
Predicted Functional Partners:
CBG22442
Protein CBG22442.
    
 0.986
mfap-1
Protein CBR-MFAP-1.
    
 0.969
prp-8
Protein CBR-PRP-8.
    
 
 0.967
prp-38
Protein CBG09713.
    
 0.962
dve-1
Protein CBR-DVE-1.
    
 
 0.917
atfs-1
Protein CBR-ATFS-1.
      
 0.885
CBG13531
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
   
  0.879
snu-23
Protein CBG00030.
    
 0.874
ned-8
Protein CBR-NED-8.
   
  
 0.873
rbmx-2
Protein CBG02589.
   
   0.864
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.