STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tost-1Protein CBG17949. (137 aa)    
Predicted Functional Partners:
erh-2
Protein CBG18033.
   
 0.965
tofu-6
Embryonic developmental protein tofu-6; Required maternally for early embryonic cell divisions. May have a role in DNA replication.
   
 0.952
pid-3
Protein CBG14989.
   
 0.926
pid-1
Protein CBG13034.
   
 
 0.908
erh-1
Enhancer of rudimentary homolog; May have a role in the cell cycle.
   
 
 0.899
ife-3
Protein CBR-IFE-3; Belongs to the eukaryotic initiation factor 4E family.
   
 0.855
tofu-1
Mitochondrial genome maintenance exonuclease 1; Metal-dependent single-stranded DNA (ssDNA) exonuclease involved in mitochondrial genome maintenance; Belongs to the MGME1 family.
   
  
 0.746
tofu-7
Protein CBG16519.
      
 0.742
tofu-2
Protein CBG19064.
      
 0.741
prde-1
Protein CBG18603.
      
 0.740
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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