STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG20250Protein CBG20250. (141 aa)    
Predicted Functional Partners:
glt-7
Amino acid transporter.
   
 
 0.655
apb-3
AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.
    
 
 0.608
haf-4
Protein CBR-HAF-4.
   
 
0.583
acs-7
Protein CBG00883.
   
  
 0.567
glo-1
Protein CBR-GLO-1.
   
  
 0.503
cup-5
Protein CBR-CUP-5.
   
  
 0.500
abtm-1
Protein CBR-ABTM-1.
    
 0.465
CBG07945
Protein CBG07945.
  
 
  0.421
irk-2
Protein CBR-IRK-2.
   
 0.410
irk-1
Protein CBR-IRK-1.
   
 0.410
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.