STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vab-15Homeobox protein vab-15; Probable transcription factor needed for the proper production of touch cell precursors. Essential for embryonic morphogenesis (By similarity); Belongs to the Msh homeobox family. (226 aa)    
Predicted Functional Partners:
lin-32
Protein CBR-LIN-32.
   
 
 0.658
pax-1
Protein CBR-PAX-1.
  
 
 
 0.645
rnt-1
Protein CBR-RNT-1.
    
 0.640
trh-1
Protein CBG00401.
      
 0.632
ceh-45
Protein CBR-CEH-45.
    
 
 0.569
ceh-79
Protein CBG06752.
      
 0.530
din-1
Protein CBR-DIN-1.
    
 
 0.527
ets-4
Protein CBR-ETS-4.
      
 0.495
ctbp-1
Protein CBR-CTBP-1.
    
 
 0.489
hlh-8
Protein CBR-HLH-8.
  
  
 0.473
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.