STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps-54Vacuolar protein sorting-associated protein 54; Acts as component of the GARP complex that is involved in retrograde transport from early and late endosomes to the trans-Golgi network (TGN). The GARP complex facilitates tethering as well as SNARE complex assembly at the Golgi (By similarity). (1055 aa)    
Predicted Functional Partners:
vps-52
Protein CBR-VPS-52.
    
 0.999
vps-51
Protein CBR-VPS-51.
   
 0.993
vps-53
Protein CBG09978.
   
 0.993
CBG10002
Protein CBG10002.
   
 0.993
vps-50
Protein CBG18297.
   
 
 0.946
syx-16
Protein CBR-SYN-16.
    
 0.878
eipr-1
Protein CBG19781.
    
 
 0.853
cogc-8
Protein CBR-COGC-8.
    
 0.837
cogc-4
Protein CBR-COGC-4.
    
 0.837
cogc-3
Protein CBR-COGC-3.
     
 0.832
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.