STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lgc-4Ligand-gated ion channel 4; Acetylcholine receptor; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (636 aa)    
Predicted Functional Partners:
CBG16675
Protein CBG16675.
      
 0.862
pxd-1
Protein CBR-PXD-1.
      
 0.859
drn-1
Protein CBR-DRN-1.
    
 
 0.848
dmsr-2
Protein CBR-DMSR-2.
      
 0.844
npr-29
Protein CBG10160.
      
 0.837
ncs-2
Protein CBR-NCS-2.
   
  
 0.645
ldb-1
Protein CBR-LDB-1.
      
 0.643
nep-21
Protein CBG04739.
      
 0.499
lgc-55
Protein CBR-LGC-55; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
  
     0.486
lgc-45
Protein CBR-LGC-45; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
  
     0.478
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.