Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CBG03263 | CBG08373 | A8WSF4 | Q61MR2 | Protein CBG03263. | IWS1-like protein. | 0.959 |
CBG03263 | cdc-73 | A8WSF4 | A8Y3L3 | Protein CBG03263. | Protein CBG22949. | 0.923 |
CBG03263 | ctr-9 | A8WSF4 | A8XAB7 | Protein CBG03263. | Protein CBG10075. | 0.777 |
CBG03263 | emb-5 | A8WSF4 | Q93148 | Protein CBG03263. | Suppressor of Ty 6 homolog; May regulate transcriptional elongation by RNA polymerase II. May be required for several aspects of morphogenesis of C.briggsae, including regulation of division in the germline and gut and specification of ventral-uterine precursor cell fate (By similarity). | 0.977 |
CBG03263 | hmg-3 | A8WSF4 | A8WW49 | Protein CBG03263. | FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] | 0.801 |
CBG03263 | hmg-4 | A8WSF4 | A8X859 | Protein CBG03263. | FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] | 0.801 |
CBG03263 | rtfo-1 | A8WSF4 | A8XVC0 | Protein CBG03263. | Protein CBG19313. | 0.832 |
CBG03263 | spt-16 | A8WSF4 | Q61E63 | Protein CBG03263. | FACT complex subunit spt-16; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment [...] | 0.891 |
CBG03263 | spt-4 | A8WSF4 | Q628A6 | Protein CBG03263. | Transcription elongation factor SPT4; May function as a component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II. DSIF may enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex (By similarity). | 0.985 |
CBG03263 | spt-5 | A8WSF4 | A8X0M4 | Protein CBG03263. | Transcription elongation factor SPT5. | 0.993 |
CBG08373 | CBG03263 | Q61MR2 | A8WSF4 | IWS1-like protein. | Protein CBG03263. | 0.959 |
CBG08373 | cdc-73 | Q61MR2 | A8Y3L3 | IWS1-like protein. | Protein CBG22949. | 0.674 |
CBG08373 | ctr-9 | Q61MR2 | A8XAB7 | IWS1-like protein. | Protein CBG10075. | 0.921 |
CBG08373 | emb-5 | Q61MR2 | Q93148 | IWS1-like protein. | Suppressor of Ty 6 homolog; May regulate transcriptional elongation by RNA polymerase II. May be required for several aspects of morphogenesis of C.briggsae, including regulation of division in the germline and gut and specification of ventral-uterine precursor cell fate (By similarity). | 0.998 |
CBG08373 | hmg-3 | Q61MR2 | A8WW49 | IWS1-like protein. | FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] | 0.887 |
CBG08373 | hmg-4 | Q61MR2 | A8X859 | IWS1-like protein. | FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] | 0.887 |
CBG08373 | rtfo-1 | Q61MR2 | A8XVC0 | IWS1-like protein. | Protein CBG19313. | 0.856 |
CBG08373 | spt-16 | Q61MR2 | Q61E63 | IWS1-like protein. | FACT complex subunit spt-16; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment [...] | 0.960 |
CBG08373 | spt-4 | Q61MR2 | Q628A6 | IWS1-like protein. | Transcription elongation factor SPT4; May function as a component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II. DSIF may enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex (By similarity). | 0.900 |
CBG08373 | spt-5 | Q61MR2 | A8X0M4 | IWS1-like protein. | Transcription elongation factor SPT5. | 0.955 |
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