STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps-140S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (257 aa)    
Predicted Functional Partners:
rps-3
Protein CBR-RPS-3; Belongs to the universal ribosomal protein uS3 family.
   
 0.999
rpl-10
Protein CBR-RPL-10.
  
 
 0.999
rpl-26
Protein CBR-RPL-26.
   
 0.999
rpl-7a
Protein CBR-RPL-7A.
   
 0.999
rpl-30
Protein CBR-RPL-30.
   
 
 0.999
rps-9
Protein CBR-RPS-9; Belongs to the universal ribosomal protein uS4 family.
   
 0.999
rack-1
Protein CBR-RACK-1.
   
 
 0.999
rpl-7
Protein CBR-RPL-7.
   
 
 0.999
rps-19
Protein CBR-RPS-19.
   
 0.999
rpl-14
Protein CBR-RPL-14.
   
 0.999
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.