STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hse-5Protein CBR-HSE-5. (618 aa)    
Predicted Functional Partners:
hst-1
Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1; Essential bifunctional enzyme that catalyzes both the N- deacetylation and the N-sulfation of glucosamine (GlcNAc) of the glycosaminoglycan in heparan sulfate. Modifies the GlcNAc-GlcA disaccharide repeating sugar backbone to make N-sulfated heparosan, a prerequisite substrate for later modifications in heparin biosynthesis (By similarity); Belongs to the sulfotransferase 1 family. NDST subfamily.
   
 0.980
hst-6
Heparan-sulfate 6-O-sulfotransferase; 6-O-sulfation enzyme which catalyzes the transfer of sulfate from 3'-phosphoadenosine 5'-phosphosulfate (PAPS) to position 6 of the N-sulfoglucosamine residue (GlcNS) of heparan sulfate.
    
 
 0.883
hst-2
Protein CBR-HST-2.
   
 
 0.873
hst-3.2
Protein CBR-HST-3.2.
      
 0.872
hst-3.1
Protein CBR-HST-3.1.
      
 0.871
sdn-1
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
 0.850
lon-2
Protein CBR-LON-2.
      
 0.743
rib-2
Protein CBR-RIB-2; Belongs to the glycosyltransferase 47 family.
      
 0.743
cle-1
Protein CBR-CLE-1, isoform b.
      
 0.740
unc-52
Protein CBR-UNC-52.
     
 0.673
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.