STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
jhdm-1JmjC domain-containing histone demethylation protein 1; Histone demethylase that specifically demethylates 'Lys-36' of histone H3, thereby playing a central role in histone code. (1063 aa)    
Predicted Functional Partners:
jmjd-2
Protein CBR-JMJD-2.
    
 
 0.862
set-15
Protein CBR-SET-15.
    
 0.688
CBG18192
Protein CBG18192.
   
 0.683
CBG10697
Protein CBG10697.
    
 0.673
set-6
Protein CBR-SET-6.
    
 0.673
CBG05841
Protein CBG05841.
    
 0.648
CBG23439
Protein CBG23439.
    
 0.648
CBG03775
Histone H3; Belongs to the histone H3 family.
    
 0.648
CBG12890
Protein CBG12890.
      
 0.643
jmjd-5
Protein CBR-JMJD-5.
      
 0.632
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.