STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG20227Protein CBG20227. (240 aa)    
Predicted Functional Partners:
cyc-1
Protein CBR-CYC-1.
   
 0.923
CBG23568
Protein CBG23568.
   
 0.920
isp-1
Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
   
 0.862
CBG14786
Protein CBG14786.
   
 0.827
CBG20773
Protein CBG20773.
   
 0.827
ucr-1
Protein CBR-UCR-1; Belongs to the peptidase M16 family.
   
 0.817
mppb-1
Protein CBR-MPPB-1; Belongs to the peptidase M16 family.
   
 0.817
acox-1.6
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
   
  
 0.779
acox-1.1
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
   
  
 0.750
acox-3
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
   
  
 0.745
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.