STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdo-1Cysteine dioxygenase; Belongs to the cysteine dioxygenase family. (190 aa)    
Predicted Functional Partners:
cth-2
Protein CBG24746.
     
 0.970
unc-25
Protein CBR-UNC-25.
     
 0.960
got-1.2
Aspartate aminotransferase.
     
 0.927
Cbr-got-1.3
Protein CBR-GOT-1.3.
     
 0.927
got-2.2
Aspartate aminotransferase.
     
 0.924
cysl-2
Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
   
 
 0.922
cysl-1
Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
   
 
 0.922
cysl-3
Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
   
 
 0.922
nkat-3
Protein CBR-NKAT-3.
     
  0.900
nkat-1
Protein CBG10259.
     
  0.900
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.