clec-223 protein (Caenorhabditis elegans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

clec-223

C-type LECtin. (1034 aa)

Predicted Functional Partners:

clec-222

0.855

Y46B2A.3

0.817

clec-80

0.817

Y62H9A.4

0.806

ZK813.3

0.792

F55B11.2

0.763

F55B11.3

0.757

T04G9.7

0.755

C17G1.2

0.753

C39D10.7

0.720

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C17G1.2	C39D10.7	C17G1.2.1	C39D10.7.2	Uncharacterized protein.	Uncharacterized protein.	0.871
C17G1.2	F55B11.2	C17G1.2.1	F55B11.2.1	Uncharacterized protein.	Uncharacterized protein.	0.917
C17G1.2	F55B11.3	C17G1.2.1	F55B11.3.2	Uncharacterized protein.	Uncharacterized protein.	0.843
C17G1.2	T04G9.7	C17G1.2.1	T04G9.7.1	Uncharacterized protein.	Uncharacterized protein.	0.921
C17G1.2	Y62H9A.4	C17G1.2.1	Y62H9A.4.2	Uncharacterized protein.	Uncharacterized protein.	0.908
C17G1.2	ZK813.3	C17G1.2.1	ZK813.3.1	Uncharacterized protein.	Uncharacterized protein.	0.883
C17G1.2	clec-223	C17G1.2.1	C03E10.5.1	Uncharacterized protein.	C-type LECtin.	0.753
C39D10.7	C17G1.2	C39D10.7.2	C17G1.2.1	Uncharacterized protein.	Uncharacterized protein.	0.871
C39D10.7	F55B11.2	C39D10.7.2	F55B11.2.1	Uncharacterized protein.	Uncharacterized protein.	0.874
C39D10.7	F55B11.3	C39D10.7.2	F55B11.3.2	Uncharacterized protein.	Uncharacterized protein.	0.764
C39D10.7	T04G9.7	C39D10.7.2	T04G9.7.1	Uncharacterized protein.	Uncharacterized protein.	0.857
C39D10.7	Y62H9A.4	C39D10.7.2	Y62H9A.4.2	Uncharacterized protein.	Uncharacterized protein.	0.852
C39D10.7	ZK813.3	C39D10.7.2	ZK813.3.1	Uncharacterized protein.	Uncharacterized protein.	0.878
C39D10.7	clec-223	C39D10.7.2	C03E10.5.1	Uncharacterized protein.	C-type LECtin.	0.720
F55B11.2	C17G1.2	F55B11.2.1	C17G1.2.1	Uncharacterized protein.	Uncharacterized protein.	0.917
F55B11.2	C39D10.7	F55B11.2.1	C39D10.7.2	Uncharacterized protein.	Uncharacterized protein.	0.874
F55B11.2	F55B11.3	F55B11.2.1	F55B11.3.2	Uncharacterized protein.	Uncharacterized protein.	0.438
F55B11.2	T04G9.7	F55B11.2.1	T04G9.7.1	Uncharacterized protein.	Uncharacterized protein.	0.921
F55B11.2	Y62H9A.4	F55B11.2.1	Y62H9A.4.2	Uncharacterized protein.	Uncharacterized protein.	0.940
F55B11.2	ZK813.3	F55B11.2.1	ZK813.3.1	Uncharacterized protein.	Uncharacterized protein.	0.908