STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C06A8.6LRRcap domain-containing protein. (349 aa)    
Predicted Functional Partners:
ZK1248.5
DUF1248 domain-containing protein.
   
    0.907
rsu-1
Ras SUppressor homolog.
  
   
 0.902
T27A3.5
Tyrosine-protein phosphatase.
   
   0.887
nkb-2
Na+/K+ ATPase, Beta subunit.
   
    0.848
rmd-3
Regulator of Microtubule Dynamics.
   
    0.846
F31E8.5
Uncharacterized protein.
   
    0.846
F32H2.7
Uncharacterized protein.
   
    0.846
K01H12.4
Uncharacterized protein.
   
    0.846
K07A1.4
Uncharacterized protein.
   
    0.846
R10E9.2
Uncharacterized protein.
   
    0.846
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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