STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C07A9.10Uncharacterized protein C07A9.10. (254 aa)    
Predicted Functional Partners:
rpl-21
60S ribosomal protein L21; Belongs to the eukaryotic ribosomal protein eL21 family.
   
   0.550
C54G6.3
Uncharacterized protein.
   
    0.538
rps-30
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
   0.536
mrpl-2
Ribosomal_L2_C domain-containing protein.
   
 
 0.486
rpl-16
60S ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.
   
   0.469
rpl-2
60S ribosomal protein L8.
   
 
 0.460
rpl-39
60S ribosomal protein L39.
   
   0.449
F47F2.2
annotation not available
   
    0.447
mrpl-13
Mitochondrial Ribosomal Protein, Large.
   
   0.430
sri-61
Serpentine Receptor, class I.
   
    0.418
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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