STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C08B6.5Uncharacterized protein. (423 aa)    
Predicted Functional Partners:
tax-2
Cyclic nucleotide-binding domain-containing protein.
   
    0.468
srx-90
G_PROTEIN_RECEP_F1_2 domain-containing protein.
   
    0.428
Y38C1AB.3
Uncharacterized protein.
   
    0.428
lgc-17
Neur_chan_LBD domain-containing protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
   
    0.420
C28H8.8
Uncharacterized protein C28H8.8.
   
    0.418
F18G5.1
Uncharacterized protein.
   
    0.410
C47C12.2
annotation not available
   
    0.408
srbc-62
Serpentine Receptor, class BC (Class B-like).
   
    0.404
C06B3.1
Uncharacterized protein.
   
    0.402
nhr-271
Nuclear Hormone Receptor family.
   
    0.400
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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